Software and Data


■ High similarity between distantly related species of a plant SINE family is consistent with a scenario of vertical transmission without horizontal transfers in Fawcett and Innan (2016) Mol. Biol. Evol. accepted? PDF

Download alignmet data 1 Download alignmet data 2

■ linkSNPs: Phasing Haplotypes from next-generation sequence data in Sasaki, Sugino and Innan (2013) Mol. Biol. Evol. 30: 2187-2196. PDF

Download a source code written in Perl

■ Simulating the coalescent process in a CNV region in Teshima and Innan (2012) Genetics 190: 1077-1086. PDF

Download a source code written in C

■ mbs: generating samples of DNA sequences with a biallelic site under selection in Teshima and Innan (2009) BMC Bioinformatics 10: 166. PDF

Download a source code written in C

■ Simulating joint sample of DNA sequences from two populations with local adaptation in Innan and Kim (2008) Genetics 179: 1713-1720. PDF

Download a source code written in C

■ Genomic Hudson-Kreitman-Aguade test in Innan (2006) Genetics 173: 1725-1733. PDF

Download a source code written in C

■ Haplotype configulation test in Innan et al. (2006) Genetics 169: 1763-1777. PDF

Download a source code written in C at Noah Rosenberg's site

■ Estimating nucleotide diversity from AFLP data in Innan et al (1999) Genetics 151: 1157-1164. PDF

Download a source code written in C